PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0059s0580.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 301aa    MW: 34642.8 Da    PI: 6.5151
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0059s0580.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.94.8e-50201501128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             l pGfrFhPtdeelv +yLk+kve+k +++ + ik++d+yk+ePwdLpk  +++a+e+ewyfF++r +ky+++ r+nr+t+sg+Wka
  SapurV1A.0059s0580.1.p  20 LLPGFRFHPTDEELVGFYLKRKVEKKLMRI-DLIKHIDVYKYEPWDLPKeaSCSAGEREWYFFCRRGRKYKNSIRPNRVTRSGFWKA 105
                             579**************************9.99**************95346667999***************************** PP

                     NAM  86 tgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                             tg dk+++s ++ +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  SapurV1A.0059s0580.1.p 106 TGIDKPIYSVGKLHfcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 150
                             *********7554477***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5219180IPR003441NAC domain
PROSITE profilePS5100552.85120181IPR003441NAC domain
PfamPF023653.1E-2622150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MELESLVTTS KDVESDDDIL LPGFRFHPTD EELVGFYLKR KVEKKLMRID LIKHIDVYKY  60
EPWDLPKEAS CSAGEREWYF FCRRGRKYKN SIRPNRVTRS GFWKATGIDK PIYSVGKLHF  120
CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PATENTASRT NPEDCNIHEA EVWTLCRIFQ  180
REAPFNKKYF SSKQMCASDS SSSPCESDSR GRHSDESFDV SAVDNNLNIE SRATGDQYAN  240
GNNNQWFAAQ LSLRNQVPFT TPYLSFSSQN GDQLFGDENW DELRPMVEFA LDPSMLYSVN  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-46111877174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2760181e-128GU276018.1 Populus balsamifera isolate GAL12 haplotype A unknown gene, partial sequence.
GenBankGU2760191e-128GU276019.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBankGU2760201e-128GU276020.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence.
GenBankGU2760211e-128GU276021.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence.
GenBankGU2760221e-128GU276022.1 Populus balsamifera isolate POR11 haplotype A unknown gene, partial sequence.
GenBankGU2760231e-128GU276023.1 Populus balsamifera isolate POR11 haplotype B unknown gene, partial sequence.
GenBankGU2760241e-128GU276024.1 Populus balsamifera isolate RNA13 haplotype A unknown gene, partial sequence.
GenBankGU2760251e-128GU276025.1 Populus balsamifera isolate RNA13 haplotype B unknown gene, partial sequence.
GenBankGU2760261e-128GU276026.1 Populus balsamifera isolate STL13 haplotype A unknown gene, partial sequence.
GenBankGU2760271e-128GU276027.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence.
GenBankJN7069081e-128JN706908.1 Populus trichocarpa isolate CVA01 locus 424060 genomic sequence.
GenBankJN7069091e-128JN706909.1 Populus trichocarpa isolate CJU02 locus 424060 genomic sequence.
GenBankJN7069101e-128JN706910.1 Populus trichocarpa isolate CKR02 locus 424060 genomic sequence.
GenBankJN7069111e-128JN706911.1 Populus trichocarpa isolate CSC01 locus 424060 genomic sequence.
GenBankJN7069131e-128JN706913.1 Populus trichocarpa isolate CKR01 locus 424060 genomic sequence.
GenBankJN7069141e-128JN706914.1 Populus trichocarpa isolate CKR03 locus 424060 genomic sequence.
GenBankJN7069151e-128JN706915.1 Populus trichocarpa isolate CKR04 locus 424060 genomic sequence.
GenBankJN7069161e-128JN706916.1 Populus trichocarpa isolate CWY14 locus 424060 genomic sequence.
GenBankJN7069171e-128JN706917.1 Populus trichocarpa isolate CJU04 locus 424060 genomic sequence.
GenBankJN7069181e-128JN706918.1 Populus trichocarpa isolate CVA02 locus 424060 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022380.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK553e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLB9GY540.0B9GY54_POPTR; Uncharacterized protein
STRINGPOPTR_0003s14950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-83NAC domain containing protein 42